Richele Messick, a Wells Fargo spokeswoman, said the San Francisco-based bank plans to appeal.
The lawsuit is separate from nationwide litigation still pending in Miami federal court against about 20 lenders, including Wells Fargo, over alleged excessive overdraft fees. Bank of America Corp. paid $410 million and JPMorgan Chase paid $110 million to settle their portions of the nationwide litigation. Those settlements won final court approval in 2011 and 2012, respectively. Both banks have also changed their overdraft fee practices.
Consumers often incur the roughly $25 or $35 fees when they overdraw their checking accounts through debit card purchases.
Wells Fargo had been accused of maximizing overdraft fees by processing such purchases from the largest to the smallest, rather than chronologically, since 2001. It has since changed its account posting practices, as have many rivals.
In December, the 9th U.S. Circuit Court of Appeals threw out the original $203 million award, saying federal law pre-empted part of a California law on which Alsup had relied in imposing an injunction to stop improper fee practices.
But the 9th Circuit said federal law did not displace California consumer law with respect to fraudulent or misleading representations and directed Alsup to review the case again.
The award punishes Wells Fargo "for affirmatively misleading the class as to what (its) practice was, namely engaging in a practice likely to mislead the class to believe that processing would be done in chronological order.
"Because Wells Fargo misrepresented the posting order and overdraft charges to its customers, the appropriate form of restitution is to restore the unexpected charges to Wells Fargo's customers," Alsup added.
The judge also permanently barred Wells Fargo from further misleading customers about the posting of transactions. He said he will consider fees for the customers' lawyers later.